Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs28399231 chr7:135093154 G/A 2.35E-9 488 30.8 31.33 3.03 KM Plot
PRAD rs28418917 chr7:135124905 T/C 2.02E-9 492 30.77 32.4 3.03 KM Plot
PRAD rs28422979 chr7:135145924 C/T 1.81E-9 494 30.8 31.4 3.03 KM Plot
PRAD rs28434757 chr22:18451554 G/A 1.97E-6 483 30.8 31.9 26.87 KM Plot
PRAD rs28460227 chr1:1122916 A/G 1.48E-5 483 31.3 29.05 24.75 KM Plot
PRAD rs28478894 chr22:18454600 G/A 1.72E-7 490 30.8 32.22 26.87 KM Plot
PRAD rs28522842 chr22:21363392 G/A 8.39E-5 488 28.38 31.32 31.05 KM Plot
PRAD rs28539127 chr15:83493843 C/T 0.00016 489 30.2 35.57 29.17 KM Plot
PRAD rs28613647 chr7:135129443 G/A 2.02E-9 492 30.77 32.4 3.03 KM Plot
PRAD rs28622424 chr17:62984210 A/G 1.22E-8 481 30.8 31.62 19.63 KM Plot
PRAD rs28626095 chr15:68066729 T/C 0.000169 490 33.47 27.4 26.02 KM Plot
PRAD rs28648687 chr1:1122937 G/A 1.48E-5 483 31.3 29.05 24.75 KM Plot
PRAD rs28670272 chr15:68109907 C/T 0.000159 494 25.67 28.23 33.42 KM Plot
PRAD rs28670980 chr7:135130416 G/A 2.4E-9 488 30.77 32.4 3.03 KM Plot
PRAD rs28675295 chr15:68116400 C/A 9.96E-5 494 33.25 28.3 26.37 KM Plot